Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_682549_682766_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

682549 - 682766

Intron Length:

218

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTATTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

GTTACAATCACT

Flanking Amino Acid:

LNSSCVRPHQVRQLFVTSEL

Intron Amino Acid Position:

484

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

1.2

78.8

35.5

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

0.72

0.7

77.4

30.1

Minor 5ss

30.7

-2.2

3.1

42.2

44.4

Minor BPS

46.2

-0.2

2.3

72.22

43.7

Associated Gene:

Gene:

MICAL2

Ensembl Gene ID:

ENSAPLG00000015960

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037244

659967 - 710419

50453

ENSAPLT00000032052

657280 - 710419

53140

ENSAPLT00000020974

659967 - 710419

50453

ENSAPLT00000016689

657280 - 710419

53140

ENSAPLT00000045999

659967 - 710419

50453