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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_682894_684115_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
682894 - 684115
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTATAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCTTCTTTATAA
Flanking Amino Acid:
GKPPLEILAERESIYRLLPQ
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
80.9
33.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
73.3
0.52
1
79.9
30.9
Minor 5ss
33.4
-1.9
2.8
44.7
42.7
Minor BPS
62
0.37
1.7
72.15
40.2

Associated Gene:

Gene:
MICAL2
Ensembl Gene ID:
ENSAPLG00000015960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037244
659967 - 710419
50453
ENSAPLT00000032052
657280 - 710419
53140
ENSAPLT00000020974
659967 - 710419
50453
ENSAPLT00000045999
659967 - 710419
50453
ENSAPLT00000016689
657280 - 710419
53140
ENSAPLT00000038926
679736 - 710419
30684