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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_684232_685069_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
684232 - 685069
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATTTA
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGCTTCTTACAG
Flanking Amino Acid:
VALVGDSLLEPFWPMGTGCA
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
79.1
30.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.6
0.67
0.9
73
36.8
Minor 5ss
49.2
-0
2.5
66.7
44.7
Minor BPS
50.4
-0.1
1.8
56.62
44.8

Associated Gene:

Gene:
MICAL2
Ensembl Gene ID:
ENSAPLG00000015960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032052
657280 - 710419
53140
ENSAPLT00000020974
659967 - 710419
50453
ENSAPLT00000045999
659967 - 710419
50453
ENSAPLT00000016689
657280 - 710419
53140
ENSAPLT00000038926
679736 - 710419
30684
ENSAPLT00000037244
659967 - 710419
50453