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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6853238_6854313_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6853238 - 6854313
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
VYLEDMSWNEDERCYTLSCR
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
85.6
0.8
0.9
84.2
30.7
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
DNAJC24
Ensembl Gene ID:
ENSAPLG00000023854
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020390
6852643 - 6886457
33815