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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6854383_6862800_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6854383 - 6862800
Intron Length:
8418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTTCC
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTTCTTTATAG
Flanking Amino Acid:
TKKEYDLQQREDNLTKEWPL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.5
37.5
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
85.9
0.81
0.7
81.1
30.2
Minor 5ss
40.2
-1.1
3
50
41.8
Minor BPS
64
0.3
1.8
72.46
40.4

Associated Gene:

Gene:
DNAJC24
Ensembl Gene ID:
ENSAPLG00000023854
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020390
6852643 - 6886457
33815