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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_6862940_6885891_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6862940 - 6885891
Intron Length:
22952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTGATTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATT
Flanking Amino Acid:
KRKYQRLALLYHPDKQQADV
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77.3
37.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.2
0.61
1
73.8
40.8
Minor 5ss
41.2
-1
2.8
53.2
38.8
Minor BPS
77.3
0.94
1
89.84
27.4

Associated Gene:

Gene:
DNAJC24
Ensembl Gene ID:
ENSAPLG00000023854
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020390
6852643 - 6886457
33815