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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_691098_691766_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
691098 - 691766
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCACTGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTATATTAAAT
Flanking Amino Acid:
KFCAGSIDHISIRQLQLILF
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
75.4
0.57
0.9
69.1
36.8
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
56.5
0.28
1.7
74.94
41.4

Associated Gene:

Gene:
MICAL2
Ensembl Gene ID:
ENSAPLG00000015960
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037131
686930 - 733510
46581
ENSAPLT00000032052
657280 - 710419
53140
ENSAPLT00000045999
659967 - 710419
50453
ENSAPLT00000020974
659967 - 710419
50453
ENSAPLT00000038926
679736 - 710419
30684
ENSAPLT00000016689
657280 - 710419
53140
ENSAPLT00000037244
659967 - 710419
50453