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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7013327_7015383_F

Intron Information:

Intron Rank:
126271
Intron Class:
major
Intron Phase:
Intron Coordinates:
7013327 - 7015383
Intron Length:
2057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
TTTTTCTTCAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
85.3
0.79
0.7
79.9
25.7
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
64.3
0.53
2
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018019
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041104
7008062 - 7016106
8045
ENSAPLT00000035174
7009163 - 7016106
6944