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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7016122_7051924_F

Intron Information:

Intron Rank:
126266
Intron Class:
major
Intron Phase:
Intron Coordinates:
7016122 - 7051924
Intron Length:
35803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AGGTATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
72.3
39.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
85.6
0.8
0.8
80.6
31.4
Minor 5ss
38.2
-1.3
3.1
50.1
46.5
Minor BPS
53.7
0.11
1.6
60.94
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018019
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020526
7014243 - 7052225
37983