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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7065337_7067687_F

Intron Information:

Intron Rank:
145951
Intron Class:
major
Intron Phase:
Intron Coordinates:
7065337 - 7067687
Intron Length:
2351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TATTCTTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
77.5
0.68
1
79.6
33
Major PPT
80
0.68
0.9
84.5
24
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
57.4
0.31
1.8
77.09
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028636
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017257
7064513 - 7068441
3929