Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7076605_7077958_F

Intron Information:

Intron Rank:

135044

Intron Class:

major

Intron Phase:

Intron Coordinates:

7076605 - 7077958

Intron Length:

1354

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAATGAGG

5'SS Class:

major

3'SS Sequence:

ATTTCCATCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

ATAACCTGAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

66.2

44.9

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

77.8

0.63

0.8

74.8

Minor 5ss

31.7

-2.1

3.1

40.2

45.5

Minor BPS

66.5

0.52

1.5

73.18

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022653

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042215

7076559 - 7081521

4963

ENSAPLT00000028105

7076559 - 7079940

3382