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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7078102_7081441_F

Intron Information:

Intron Rank:
135047
Intron Class:
major
Intron Phase:
Intron Coordinates:
7078102 - 7081441
Intron Length:
3340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
TTTCATCTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGATTTTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
100
1.24
0.5
100
0
Major PPT
73.5
0.53
0.9
67.5
38.7
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
60.1
0.4
1.7
75.56
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022653
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042215
7076559 - 7081521
4963