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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7100751_7106944_F

Intron Information:

Intron Rank:
150223
Intron Class:
major
Intron Phase:
Intron Coordinates:
7100751 - 7106944
Intron Length:
6194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
TCTGCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ACAACTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
71.3
35.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.7
0.73
0.8
76.6
32
Minor 5ss
26.6
-2.7
3
31.2
42.7
Minor BPS
56.9
0.19
1.4
59.73
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030738
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018193
7100621 - 7107811
7191