Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7133901_7168347_F

Intron Information:

Intron Rank:

134265

Intron Class:

major

Intron Phase:

Intron Coordinates:

7133901 - 7168347

Intron Length:

34447

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATGTTTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.5

38.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

88.1

0.86

0.7

80.5

31.5

Minor 5ss

25.2

-2.8

3.2

31.3

42.9

Minor BPS

73.6

0.82

1.1

81.25

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042620

7133117 - 7176140

43024

ENSAPLT00000019191

7133117 - 7168882

35766