Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7181482_7211285_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7181482 - 7211285

Intron Length:

29804

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

GTGTCTGCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AATCTTGTAACT

Flanking Amino Acid:

QSRFQPPHVHMVDPIPYDTP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

92.9

22.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

69.3

0.44

66.4

40.7

Minor 5ss

44.1

-0.6

2.9

65.1

39.1

Minor BPS

0.14

72.42

38.5

Associated Gene:

Gene:

MPPED2

Ensembl Gene ID:

ENSAPLG00000004348

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004470

7181238 - 7275376

94139