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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7211468_7232049_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7211468 - 7232049
Intron Length:
20582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTTGTTATTT
Flanking Amino Acid:
SEVKKFNDWLGNLPYEYKIV
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
56.6
0.28
2.2
82.89
39.2

Associated Gene:

Gene:
MPPED2
Ensembl Gene ID:
ENSAPLG00000004348
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004470
7181238 - 7275376
94139