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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7269437_7271553_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7269437 - 7271553
Intron Length:
2117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATACTATTGATT
Flanking Amino Acid:
DILMTHGPPLGFRDWVPKEL
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.9
0.72
0.8
78.5
35.5
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
50.7
0.1
1.6
68.31
36

Associated Gene:

Gene:
MPPED2
Ensembl Gene ID:
ENSAPLG00000004348
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004470
7181238 - 7275376
94139