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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7271668_7274945_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7271668 - 7274945
Intron Length:
3278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATTACAGTAAGT
Flanking Amino Acid:
KLHVFGGIHEGYGIMTDGYT
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
80.8
0.69
0.8
73.8
30.6
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
46
-0.2
2.4
72.39
44.1

Associated Gene:

Gene:
MPPED2
Ensembl Gene ID:
ENSAPLG00000004348
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004470
7181238 - 7275376
94139