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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7300488_7310464_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7300488 - 7310464
Intron Length:
9977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATACTAATACCT
Flanking Amino Acid:
QSKTTSFNSDSASLTSRTFI
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.1
0.7
0.9
73.5
41.9
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
43.2
-0.4
2
62.92
40.5

Associated Gene:

Gene:
ARL14EP
Ensembl Gene ID:
ENSAPLG00000004333
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040285
7300045 - 7313512
13468