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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7343345_7343966_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7343345 - 7343966
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGACTC
5'SS Class:
major
3'SS Sequence:
TTGTAATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CTTCTTGTAATT
Flanking Amino Acid:
TWCSGYCFTRDPVYKYPPVS
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
65.9
40.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
81.2
0.7
0.9
78
40.1
Minor 5ss
30.6
-2.2
3.1
34.5
41.3
Minor BPS
50.5
0.09
2
71.97
40.1

Associated Gene:

Gene:
FSHB
Ensembl Gene ID:
ENSAPLG00000024439
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038241
7343108 - 7344125
1018