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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7450569_7493924_F

Intron Information:

Intron Rank:
123326
Intron Class:
major
Intron Phase:
Intron Coordinates:
7450569 - 7493924
Intron Length:
43356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTCTTTTGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.8
0.58
0.9
73.5
37.1
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016492
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045383
7450261 - 7494261
44001