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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7450569_7508237_F

Intron Information:

Intron Rank:
123325
Intron Class:
major
Intron Phase:
Intron Coordinates:
7450569 - 7508237
Intron Length:
57669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTGTTCCCATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
70.8
0.47
0.9
70
35.8
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
44.5
-0.4
2
58.64
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016492
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035651
7450261 - 7508805
58545