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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7450569_7520658_F

Intron Information:

Intron Rank:
123324
Intron Class:
major
Intron Phase:
Intron Coordinates:
7450569 - 7520658
Intron Length:
70090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
CTCAACTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
81.8
0.72
0.9
75.5
38.4
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
49.8
0.07
1.7
66.49
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016492
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023855
7450261 - 7521637
71377