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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7735782_7782443_R

Intron Information:

Intron Rank:
130068
Intron Class:
major
Intron Phase:
Intron Coordinates:
7735782 - 7782443
Intron Length:
46662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGCTTG
5'SS Class:
major
3'SS Sequence:
CTCTTACTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCTCTCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.5
39.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
79.8
0.67
0.8
77.7
29.9
Minor 5ss
49.2
-0
2.8
64.9
40.8
Minor BPS
61.6
0.44
1.6
76.4
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017192
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034850
7732592 - 7782530
49939