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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7972745_7973878_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7972745 - 7973878
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATACTTTAAAT
Flanking Amino Acid:
ICNVAVSYLEVYNEQIRDLL
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.7
0.6
1
78.1
28.1
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
67
0.61
1.4
78.06
37.5

Associated Gene:

Gene:
KIF18A
Ensembl Gene ID:
ENSAPLG00000003823
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024841
7971510 - 8007876
36367
ENSAPLT00000023574
7971447 - 8007876
36430
ENSAPLT00000003917
7971510 - 8004629
33120