Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7975149_7978543_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7975149 - 7978543

Intron Length:

3395

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGATGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCCTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TACTTCTTAATT

Flanking Amino Acid:

SSSRSHAVFQIYLRQQDKTA

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.8

73.8

Major BPS

0.92

0.9

86.2

29.1

Major PPT

86.2

0.81

0.6

81.9

22.9

Minor 5ss

31.9

-2.1

38.8

46.3

Minor BPS

78.2

0.96

1.1

84.43

36.6

Associated Gene:

Gene:

KIF18A

Ensembl Gene ID:

ENSAPLG00000003823

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023574

7971447 - 8007876

36430

ENSAPLT00000003917

7971510 - 8004629

33120