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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7975149_7982417_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7975149 - 7982417
Intron Length:
7269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TAATCCATAAAA
Flanking Amino Acid:
SSSRSHAVFQSKKQHIPYRN
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
81.2
0.7
0.8
73.6
36.6
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
62.3
0.38
1.7
72.57
38.2

Associated Gene:

Gene:
KIF18A
Ensembl Gene ID:
ENSAPLG00000003823
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024841
7971510 - 8007876
36367