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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7983937_7986956_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7983937 - 7986956
Intron Length:
3020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
TTGCTTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTCTTCATTT
Flanking Amino Acid:
LSNHQQEEIKRYQEILKNVF
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.5
0.62
0.9
73.6
35.7
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
57.7
0.32
1.8
77.25
39.7

Associated Gene:

Gene:
KIF18A
Ensembl Gene ID:
ENSAPLG00000003823
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024841
7971510 - 8007876
36367
ENSAPLT00000023574
7971447 - 8007876
36430
ENSAPLT00000003917
7971510 - 8004629
33120