About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_7987120_7990954_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7987120 - 7990954
Intron Length:
3835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTGCCATAAACA
Flanking Amino Acid:
LMCSEERVEKATCKRDHRLA
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.1
0.74
0.8
81.5
35.9
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
49.4
-0
2
63.04
42.7

Associated Gene:

Gene:
KIF18A
Ensembl Gene ID:
ENSAPLG00000003823
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024841
7971510 - 8007876
36367
ENSAPLT00000023574
7971447 - 8007876
36430
ENSAPLT00000003917
7971510 - 8004629
33120