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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8003579_8003894_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8003579 - 8003894
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTCC
5'SS Class:
major
3'SS Sequence:
CGTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAAAT
Flanking Amino Acid:
SQPCSSSILQRLGLPSLKSK
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.4
34.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84
0.76
0.8
81.4
34.9
Minor 5ss
47.6
-0.2
2.3
62.8
41.7
Minor BPS
67.1
0.61
1.7
84.88
34.6

Associated Gene:

Gene:
KIF18A
Ensembl Gene ID:
ENSAPLG00000003823
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003917
7971510 - 8004629
33120
ENSAPLT00000024841
7971510 - 8007876
36367
ENSAPLT00000023574
7971447 - 8007876
36430