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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8004003_8004478_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8004003 - 8004478
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTCATATCT
Flanking Amino Acid:
SAAERKRKVLRS*
Intron Amino Acid Position:
847

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
75.9
0.58
0.9
74.6
34.9
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
54.5
0.22
2
80.25
41.8

Associated Gene:

Gene:
KIF18A
Ensembl Gene ID:
ENSAPLG00000003823
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003917
7971510 - 8004629
33120