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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_802966_803047_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
802966 - 803047
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TACTCAGTAAAT
Flanking Amino Acid:
IPLENIEFAKGRGTFPCDIS
Intron Amino Acid Position:
1275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
82.1
0.72
0.8
80.3
31.7
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
48.1
-0
2.3
71.75
44.5

Associated Gene:

Gene:
USP47
Ensembl Gene ID:
ENSAPLG00000015288
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026421
801673 - 851535
49863
ENSAPLT00000015975
801673 - 851535
49863