About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8037446_8038744_F

Intron Information:

Intron Rank:
149428
Intron Class:
major
Intron Phase:
Intron Coordinates:
8037446 - 8038744
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATTCACCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTGTATTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
78.8
0.65
0.9
74.4
35.4
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
49.1
0.01
2
72.86
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030405
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030209
8037193 - 8039037
1845
ENSAPLT00000027494
8037193 - 8043808
6616