Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_807869_808927_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

807869 - 808927

Intron Length:

1059

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGCGT

5'SS Class:

strong_major

3'SS Sequence:

TATTTGTTTATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

AATTCTTTAATC

Flanking Amino Acid:

VYQLLVNEPEPCKFLLDAVF

Intron Amino Acid Position:

1137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

73.4

43.3

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

0.72

0.8

76.8

37.1

Minor 5ss

32.5

-2

3.4

47.7

47.8

Minor BPS

77.9

0.86

77.87

31.2

Associated Gene:

Gene:

USP47

Ensembl Gene ID:

ENSAPLG00000015288

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015975

801673 - 851535

49863

ENSAPLT00000026421

801673 - 851535

49863