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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8097501_8097631_F

Intron Information:

Intron Rank:
134260
Intron Class:
major
Intron Phase:
Intron Coordinates:
8097501 - 8097631
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCCCAAGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74.1
0.54
0.9
68.1
37.6
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
46.5
-0.1
1.9
68.92
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022150
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041991
8096150 - 8097772
1623