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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8107654_8139974_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8107654 - 8139974
Intron Length:
32321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTGTCCTTAACA
Flanking Amino Acid:
MFHQVRRVMTI
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
75.1
0.62
1
65.6
41
Major PPT
77.7
0.62
0.9
73.7
35.7
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
90.6
1.27
0.9
91.48
29.8

Associated Gene:

Gene:
BDNF
Ensembl Gene ID:
ENSAPLG00000003798
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003878
8107451 - 8140736
33286