Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8161699_8165464_F

Intron Information:

Intron Rank:

133157

Intron Class:

major

Intron Phase:

Intron Coordinates:

8161699 - 8165464

Intron Length:

3766

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGAG

5'SS Class:

strong_major

3'SS Sequence:

TGTTCCCTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTAAAT

U12 Branch Point Sequence:

TAAGACTAAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

40.1

Major BPS

0.27

1.1

67.3

35.2

Major PPT

79.6

0.67

0.8

74.2

30.9

Minor 5ss

28.4

-2.5

3.5

47.6

Minor BPS

-0.4

1.9

50.21

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021596

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036942

8161543 - 8165543

4001