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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8175206_8179149_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8175206 - 8179149
Intron Length:
3944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TCCTCTTTACCA
Flanking Amino Acid:
ALGEPVRLERDICRAIELLE
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
60.4
45.8
Major BPS
74
0.6
1
65.6
41.1
Major PPT
84.7
0.78
0.7
78.2
36
Minor 5ss
24.7
-2.9
3
29.5
43.3
Minor BPS
64.2
0.44
1.6
70.26
42.8

Associated Gene:

Gene:
LIN7C
Ensembl Gene ID:
ENSAPLG00000031087
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030687
8175169 - 8186143
10975