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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8179269_8180361_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8179269 - 8180361
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCCCTAAAG
Flanking Amino Acid:
QSEFCNAVREVYEHVYETVD
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.9
0.65
0.9
79.7
26.4
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
68
0.43
1.9
77.92
38.4

Associated Gene:

Gene:
LIN7C
Ensembl Gene ID:
ENSAPLG00000031087
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030856
8178179 - 8186143
7965
ENSAPLT00000030687
8175169 - 8186143
10975