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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8180434_8180788_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8180434 - 8180788
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCTTATAAAT
Flanking Amino Acid:
PEVRANATAKATVAAFAASE
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.3
0.88
0.7
84.4
30.3
Minor 5ss
31
-2.2
3.4
42.5
44.5
Minor BPS
57.2
0.3
1.7
79.39
36.1

Associated Gene:

Gene:
LIN7C
Ensembl Gene ID:
ENSAPLG00000031087
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030856
8178179 - 8186143
7965
ENSAPLT00000030687
8175169 - 8186143
10975