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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_819634_819905_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
819634 - 819905
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTACCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTTTTTTACCA
Flanking Amino Acid:
SRGYYSSAFASSTNAYMLIY
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
90.1
0.9
0.8
85.7
33.5
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
71.5
0.67
1.5
82.25
33.1

Associated Gene:

Gene:
USP47
Ensembl Gene ID:
ENSAPLG00000015288
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015975
801673 - 851535
49863
ENSAPLT00000026421
801673 - 851535
49863