About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8224039_8238918_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8224039 - 8238918
Intron Length:
14880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
AATTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTTATGACT
Flanking Amino Acid:
AFKNFPYLEELRLAGNDLSF
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
78.6
35.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.8
0.8
0.8
77.7
40.7
Minor 5ss
41.5
-0.9
3.5
68.1
42.7
Minor BPS
61.7
0.45
1.6
80.32
35.2

Associated Gene:

Gene:
LGR4
Ensembl Gene ID:
ENSAPLG00000003183
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003293
8223967 - 8266296
42330