About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8238991_8240450_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8238991 - 8240450
Intron Length:
1460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
GAAATTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
ACTACATTAACA
Flanking Amino Acid:
ALSGLKELKVLTLQNNQLKT
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
72.7
0.51
1
65
45.1
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
64.6
0.45
1.7
72.08
39.4

Associated Gene:

Gene:
LGR4
Ensembl Gene ID:
ENSAPLG00000003183
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003293
8223967 - 8266296
42330