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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8240523_8251155_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8240523 - 8251155
Intron Length:
10633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TGTTTCAATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TCTGTTTCAATC
Flanking Amino Acid:
AIRGLSGLQSLRLDANHITA
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
71.8
0.49
1
64.2
41.7
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
51.4
0.02
1.6
61.08
39.5

Associated Gene:

Gene:
LGR4
Ensembl Gene ID:
ENSAPLG00000003183
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003293
8223967 - 8266296
42330