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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8251372_8251894_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8251372 - 8251894
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATTCACTCATCC
Flanking Amino Acid:
AFTNLSSLVVLHLHNNKIKT
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
80.3
34.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
86
0.81
0.7
85.1
29.7
Minor 5ss
39.1
-1.2
3.1
61.3
43
Minor BPS
47.9
-0.1
2
64.2
40.6

Associated Gene:

Gene:
LGR4
Ensembl Gene ID:
ENSAPLG00000003183
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003293
8223967 - 8266296
42330