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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8251967_8253701_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8251967 - 8253701
Intron Length:
1735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TATTTTCTAACT
Flanking Amino Acid:
CFDGLDNLETLDLNYNNMVE
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
84.4
0.77
0.8
77.9
36.6
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
68.2
0.65
1.6
85.44
34.4

Associated Gene:

Gene:
LGR4
Ensembl Gene ID:
ENSAPLG00000003183
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003293
8223967 - 8266296
42330