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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8253771_8254365_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8253771 - 8254365
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CTAATATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTTCTAAATG
Flanking Amino Acid:
AIKALPSLKELAFHSNYISI
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
81.7
31.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.2
0.45
0.9
67.1
39.1
Minor 5ss
38.8
-1.3
3
57.3
41.2
Minor BPS
62.9
0.27
1.7
67.77
40.4

Associated Gene:

Gene:
LGR4
Ensembl Gene ID:
ENSAPLG00000003183
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003293
8223967 - 8266296
42330