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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8254438_8254523_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8254438 - 8254523
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTCATTT
Flanking Amino Acid:
AFAGNPLLRTIHLYDNPLSF
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
89.1
24.2
Major BPS
100
1.24
0.5
100
0
Major PPT
84
0.76
0.8
76.7
37.1
Minor 5ss
39.8
-1.1
2.9
56
41.5
Minor BPS
51.2
0.11
1.7
72.11
39.6

Associated Gene:

Gene:
LGR4
Ensembl Gene ID:
ENSAPLG00000003183
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003293
8223967 - 8266296
42330