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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8255688_8256812_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8255688 - 8256812
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TCTGTTTTGAAG
Flanking Amino Acid:
LCQEQKMLRTLDLSYNNIKD
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
76.2
32.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
77
0.61
1
78.5
33.7
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
48.9
-0.2
1.6
54.07
41.8

Associated Gene:

Gene:
LGR4
Ensembl Gene ID:
ENSAPLG00000003183
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003293
8223967 - 8266296
42330