Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8261896_8264987_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8261896 - 8264987

Intron Length:

3092

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATCTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTAAAT

U12 Branch Point Sequence:

TTTTTTTTTTCT

Flanking Amino Acid:

QTIIHCTPATGAFKPCEYLL

Intron Amino Acid Position:

461

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

78.6

35.9

Major BPS

57.4

0.18

1.1

64.9

37.3

Major PPT

91.4

0.93

0.6

85.5

29.2

Minor 5ss

38.1

-1.3

3.1

52.9

44.3

Minor BPS

45.5

-0.2

3.6

82.93

38.6

Associated Gene:

Gene:

LGR4

Ensembl Gene ID:

ENSAPLG00000003183

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003293

8223967 - 8266296

42330